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General Discussion: Lost folders/files on OS HDD

You need to start with the partition table and manually walk it and subsequent boot sectors to find out what is going on. If you can't follow the pointers from partition to boot to NTFS MFT (or what ever other filesystem structure) then the operating system wont be able to do it either. Anything else is guess work and although you may get data back, you won't know what is causing the issue.

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